RNA Structure Prediction Including Pseudoknots Based on Stochastic Multiple Context-Free Grammar
published: Feb. 25, 2007, recorded: June 2006, views: 290
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Several grammars have been proposed for modeling RNA pseudoknotted structure. In this paper, we focus on multiple contextfree grammars (MCFGs), which are natural extension of context-free grammars and can represent pseudoknots, and extend a specific subclass of MCFGs to a probabilistic model called SMCFG.
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